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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Suz12
wikigenes
PDBj
CellType: Oligodendrocytes
ATCC
MeSH
RIKEN BRC
SRX4623957
ChIP-seq for SUZ12 in mouse oligodendrocytes: BAC
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Suz12
Cell type
Cell type Class
Neural
Cell type
Oligodendrocytes
NA
NA
Attributes by original data submitter
Sample
strain
FVB/N
dev_stage
1 month
sex
male
tissue
oligodendrocyte
factor
SUZ12
condition
BAC
Sequenced DNA Library
library_name
suz12_bac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
269599650
Reads aligned (%)
96.2
Duplicates removed (%)
24.6
Number of peaks
26552 (qval < 1E-05)
mm9
Number of total reads
269599650
Reads aligned (%)
0.0
Duplicates removed (%)
25.0
Number of peaks
26776 (qval < 1E-05)
Base call quality data from
DBCLS SRA